Fig. 5

The top (red) and second (blue) most common amino acids across the genome. Many samples had little minor genomic variation (seen with the blue dots); however, at some amino acid positions, there was a mixed population of amino acids shown by the proportion of the second most common amino acid being > 0.1. As timepoints increased minor variation changed seen by changes in the proportion of the top (red dot) and second (blue dot) most common amino acids